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If the network correction is known for both the request and response, and their sum is not larger that the measured peer delay, allowing the transparent clocks to be running up to 100 ppm faster than the client's clock, apply the corrections to the NTP offset and peer delay. Don't correct the root delay to not change the estimated maximum error.
This is a collection of simulation tests using the clknetsim simulator (supported on Linux only). https://github.com/mlichvar/clknetsim The CLKNETSIM_PATH environment variable should point to the directory where clknetsim was downloaded and compiled. If the variable is not set, the tests will look for clknetsim in ./clknetsim in the current directory. The tests are written in bash and they can be run directly. The ./run script runs all tests.